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    Home > Biochemistry News > Biotechnology News > Read the material in the GenBank file format.

    Read the material in the GenBank file format.

    • Last Update: 2020-10-25
    • Source: Internet
    • Author: User
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    、 LOCUS
    GenBank ,
    LOCUS NM_001469 2156 bp mRNA linear()PRI ( primate )16-DEC-2004
    DEFINITION Homo sapiens thyroid autoantigen 70kDa (Ku antigen) (G22P1), mRNA.The LOCUS field contains a number of different data elements, including locus name, sequence length, molecule type, GenBank division, and modification date. Each element is described below.
    、 COMMENT
    1 、 REVIEWED REFSEQ : RefSeq 。
    2、 Summary :。
    、 Feature
    : information about genes and gene products, as well as regions of ( biological significance reported in the )sequence. These can include regions of the sequence that code for proteins and RNA molecules.Feature , The DDBJ/EMBL/GenBank Feature Table. 1、 key : Location/Qualifier 。2 、 complement : c
    DNA
    。 If a feature is located on the complementary strand, the word "complement" will appear before the base span. 3 、 5< : 5 ’。 If the "<" symbol precedes a base span, the sequence is partial on the 5' end (e.g., CDS <1..206). If the ">" symbol follows a base span, the sequence is partial on the 3' end (e.g., CDS 435..915>. 4 、 /db_xref :。
    /db_xref="taxon:9606" taxonomy
    /db_xref="GeneID:2547" Gene 。
    /db_xref="LocusID:2547" Locuslink 。
    /db_xref="MIM:152690" OMIM 。
    、:
    Key =Location/Qualifiers
    CDS=23..400
    ====/product="alcohol dehydrogenase"
    ====/gene="adhI"
    might be read as:
    The feature CDS is a coding sequence beginning at base 23 and ending at base 400, has a product called 'alcohol dehydrogenase' and is coded for by a gene called“ adhI ” A more complex description:
    Key=Location/Qualifiers
    CDS=join(544..589,688..>1032)
    ====/product="T-cell receptor beta-chain"
    which might be read as:
    This feature, which is a partial coding sequence is formed by joining elements indicated to form one contiguous sequence encoding a product called T-cell receptor beta-chain.
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