The "fully open" tool identifies instances of online research datasets that should be made public but locked.

Forgot to release your data? A tool called Full Open identifies instances of online research datasets that should have been made public but locked.
a study published in the American Journal of Public Library of Science Biology shows that the tools have marked hundreds of such examples in the field of genetic research.
when research is being peer-reviewed, scientists typically put "hidden" data in a network repository and then expose the data set.
example, there are two popular repositories, the Gene Expression Caraly (GEO) and the Sequence Fragment Archive (SRA), which give researchers the option to hide genetic data.
both are managed by the U.S. National Biotechnology Information Center and require that data sets be made public when papers are published.
, however, says Maxim Grechkin, a computer scientist at the University of Washington, in practice, scientists often forget to do so.
, Grechkin and his collaborators developed a "fully open" tool focusing on GEO and SRA, designed to find unocused data.
tool scans papers for content involving unique data set identifier codes (using GEO or SRA code formats).
Grechkin says it can also be tuned to query other repositories.
valid code is identified "fully open," the repository is searched to determine if the dataset is publicly available.
it marks any datasets that should be exposed but are not actually in the "overdue" state.
Grechkin team used "fully open" tools to search for about 1.5 million papers in the Open Access Database, a public medicine center in biomedical research.
tool confirms that 473 data sets do not appear in GEO and 84 data sets do not appear in SRA.
team reported their findings to both repositories.
Tanya Barrett, head of THEGE's search team, said that when employees began to verify, they found that 27 tagged data sets had been made public - meaning there was a short lag in data disclosure for some publications.
time, they released 429 "overdue" data sets.
the remaining examples either refer to incorrect code or refer to datasets that cannot be made public due to privacy concerns or incomplete data submissions.
"We are very happy to add 'full open' to the tools we use.
," says Barrett.
, she said, most of the researchers who used GEO did release their data after the paper was published.
GEO employees often use warnings from the Public Medical Center and Google Academic to track published papers, but because it's a manual process, there are misses.
the paper, the researchers said they plan to work with SRA staff to ensure that their hidden data sets are also released.
currently, the "fully open" tool searches for GEO and SRA about once a month and automatically updates missing papers on its website.
"In my experience, researchers who put data into GEO or SRA intend to make it public at some point.
," says Timothy Vines, a former editor-in-chief of Molecular Ecology magazine who has written about the importance of data sharing.
is that many researchers have yet to make their data public.
"most researchers I know don't even want to worry about storing data somewhere, let alone sharing it."
," says Chris Hartgerink, a statistician at the University of Tilburg in the Netherlands.
meanwhile, Hartgerink believes that "fully open" tools can be adapted to monitor clinical trial data sets with clear identifiers.
, however, it is more difficult to apply them to areas such as social sciences, as they do not use registration codes widely, making data sets difficult to track.
limitation of "full openness" is that it currently scans only publicly available papers because the team has not yet been granted legal permission to scan subscriptions.
Grechkin said it was in contact with subscription publishers to seek their permission.
Grechkin argues that eventually journals should share some of the responsibilities to ensure that data sets are publicly available.
future, "fully open" tools may also begin to rank journals based on their data-sharing practices.
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